Former vice president Teofisto Guinogona joined the two inside the Philippine National Police bus.
The arrests on Lim and Trillanes were effected shortly after they declared that they were leaving the hotel where they held a six-hour siege to demand the resignation of President Gloria Macapagal-Arroyo.
Trillanes and his group decided to end the standoff after government troops threw teargas at the hotel lobby and an armored personnel carrier rammed the entrance.
"We're going out for the sake of the safety of everybody, for your sake because we cannot live with our conscience if some of you get hurt or get killed in the crossfire," said Trillanes, addressing the media.
"If there's a loser here it's the Filipino nation because she's [Arroyo] still there," he added, noting that he was ready to face the consequences of his action.
Brigadier General Danilo Lim, who was with Trillanes, said this was not the end, calling the incident an “unfinished business.”
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